publications

2025

  1. threadDNA-Phenotype-autism-1200-1024x692.webp
    Decomposition of phenotypic heterogeneity in autism reveals underlying genetic programs
    Aviya Litman, Natalie Sauerwald, LeeAnne Green Snyder, and 6 more authors
    Nature Genetics, 2025
    DOI
  2. otari_logo.png
    Variant-resolved prediction of context-specific isoform variation with a graph-based attention model
    Aviya Litman, Zhicheng Pan, Ksenia Sokolova, and 6 more authors
    Cell Genomics, 2025
    DOI
  3. Interpretable variant pathogenicity scores with disease-specific resolution
    Yun Hao, Tess Marvin, Aviya Litman, and 4 more authors
    Under review, 2025
  4. Comparative metagenomics using pan-metagenomics graphs
    Izaak Coleman, Natalya Mametyarova, Andrey Zaznaev, and 8 more authors
    Under review, 2025
    DOI

2023

  1. Characterizing the Genetic Architecture of Rare Glomerulonephropathy Disease: The Landscape of RNA Binding Protein Dysregulation
    Tess A Marvin, Aviya Litman, Chen Wang, and 6 more authors
    Journal of the American Society of Nephrology, 2023
    DOI

2022

  1. Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates
    Tyler A Joseph, Philippe Chlenski, Aviya Litman, and 2 more authors
    Genome Research, 2022
    DOI